S
- (Astor) Sherkuli
- (Skārdu District) Shengus
- (Diamīr) Shekho
- (Astor) Shankargarh
- (Ghizer District) Shamran
- (Ghizer District) Serbal
- (Skārdu District) Satpura
- (Diamīr) Satil
- (Gilgit) Sassi
- (Astor) Sardar Kothi
- (Ghizer District) Sandhi
- (Skārdu District) Saindu
- (Astor) Shahim Baihk
- (Astor) Serka Baihk
- (Astor) Satran Mark Domel
- (Astor) Shodas Baihk
- (Astor) Sahib Itli Baihk
- (Astor) Sangali Thuk
- (Astor) Sakmal
- (Skārdu District) Simlok
- (Skārdu District) Shigar
- (Skārdu District) Shori
- (Skārdu District) Shakhma Naiya
- (Skārdu District) Shakhma
- (Skārdu District) Shilat
- (Ghanche District) Siksa
- (Ghanche District) Sogmas
- (Hunza-Nagar District) Sad Baldi
- (Hunza-Nagar District) Sumaiyar
- (Skārdu District) Shinchapbi Biaho