S
- (Ghanche District) Sogha
- (Ghanche District) Stan Sakting
- (Diamīr) Shaindar
- (Diamīr) Spin Dheri Baihk
- (Diamīr) Sagar
- (Diamīr) Shamu di Baihk
- (Diamīr) Shair Dot
- (Skārdu District) Shabriwal
- (Skārdu District) Samuni
- (Skārdu District) Saindu
- (Skārdu District) Satambar
- (Skārdu District) Sinkermu
- (Skārdu District) Shaghran
- (Skārdu District) Shahid Chauk
- (Ghanche District) Surmon Chogga Grong
- (Skārdu District) Stak
- (Hunza-Nagar District) Spe Syngo
- (Hunza-Nagar District) Spindrainjabad
- (Skārdu District) Shawaran
- (Skārdu District) Skinmung
- (Ghizer District) Singal
- (Gilgit) Sinakkar
- (Skārdu District) Silbu
- (Ghanche District) Siari
- (Skārdu District) Sheriting
- (Hunza-Nagar District) Shimshal
- (Gilgit) Shimrot
- (Ghizer District) Shimisto Shal
- (Skārdu District) Shigarthang
- (Ghizer District) Sher Qila