S
- (Province of Lanao del Norte) Suso
- (Province of Bukidnon) Sungko
- (Province of Bukidnon) Sungaong
- (Province of Misamis Occidental) Sungan
- (Province of Misamis Occidental) Sumasap
- (Province of Misamis Oriental) Sumalag
- (Province of Bukidnon) Sugod
- (Province of Camiguin) Subocan
- (Province of Bukidnon) Somolo
- (Province of Misamis Occidental) Solipat
- (Province of Misamis Occidental) Solaton Island
- (Province of Misamis Oriental) Solana
- (Province of Misamis Occidental) Sinusa
- (Province of Misamis Occidental) Siniam
- (Province of Misamis Oriental) Sinai
- (Province of Bukidnon) Sinanoag
- (Province of Bukidnon) Sinalangnan
- (Province of Misamis Occidental) Sinaad
- (Province of Bukidnon) Simsiman
- (Province of Misamis Oriental) Simalac
- (Province of Misamis Occidental) Siloy
- (Province of Bukidnon) Silo-o
- (Province of Misamis Occidental) Silongan
- (Province of Bukidnon) Silipon
- (Province of Misamis Occidental) Silangit
- (Province of Misamis Occidental) Silanga Island
- (Province of Misamis Oriental) Silad
- (Province of Lanao del Norte) Sigayan
- (Province of Misamis Occidental) Sibugon
- (Province of Misamis Occidental) Sibaroc