- Effingham Island
- Egg Island
- Egmont
- Ekins Point
- Elbow Islet
- Elgin
- Eliza Island
- Eliza Islands
- Elizabeth Island
- Elk Bay
- Ellen Island
- Elliott Island
- Elphinstone
- Elworthy Island
- Emilia Island
- Emily Group
- End Island
- Englishman River South
- Entrance Island
- Erasmus Island
- Erin Island
- Escalante Island
- Esperanza
- Esquimalt
- Essondale
- Estevan Group
- Estevan Point
- Ethel Island
- Eveleigh Island
- Everard Islets