S
- (Kūf Āb) Sūt Kham
- (Tashkān) Sūskān
- (Jurm) Sundar
- (Shighnan District) Sūdūj
- (Jurm) Sūch
- (Yamgān) Spōz̲h̲mêy
- (Argō) Spīn Gāw
- (Wākhān) Shpikrif
- (Wākhān) Sust Bālā
- (Wākhān) Sust
- (Ishkāshim) Surkh Darah
- (Arghanj Khwāh) Sum Darah
- (Wākhān) Shkhowr
- (Kuran Wa Munjan) Skāzir
- (Ishkāshim) Shūlwadar
- (Wākhān) Shkhowr
- (Kūf Āb) Shkharō
- (Shighnan District) Shiwa
- (Yaftal-e Suflá) Shēr Kush
- (Khwāhān) Shing Darah
- (Yāwān) Shayngān
- (Jurm) Sīnah
- (Kōhistān) Shēpū-ye Bālā
- (Yaftal-e Suflá) Shilkhazār
- (Kishim) Shikastagān
- (Shighnan District) Sheghnān
- (Argō) Shamar
- (Yāwān) Shalmānd
- (Yaftal-e Suflá) Shakarlab-e Pā’īn